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Excel + Cytoscape + R = ExCytR
My new project is coming along nicely and should be released early 2013. It builds on the structures developed in imDEV to link Excel, Cytoscape and R using RExcel, RCytoscape, and CytoscapeRPC . This...
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ExCytR Concept
The concept is to make a GUI to provide a static and dynamic linking between data and its network representations. Static access will involve making networks based on data and metadata stored in some...
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Making Chemical Similarity Networks
Chemical similarity networks (CSN) can be used to explore multivariate metabolomic data within a biological context. In CSN networks, nodes represent metabolites and edges are formed between metabolite...
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Anaerobic Stress in Seeds – A Chemical Similarity Network Story
The chemical similarity network or CSN is a great tool for organizing biological data based on known biochemistry or chemical structural similarity. Here is an example CSN for visualizing metabolomic...
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Visualization of Multivariate Biological Models (PLS-DA and OPLS-DA)
Its not uncommon to be faced by multiple questions at the same time. For instance imagine the following experimental design. You have one MAIN question: what is different between groups A and B, but...
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